Literature & Pre-prints

Foundational Sonogenetics Literature:

Introduction to Sonogenetics for Ultrasound Scientists (Walsh, Yoon, Anderson, et al., 2025, IEEE)
A comprehensive review explaining the principles of sonogenetics for the physics and engineering community, focusing on the interface between transducer design and biological activation.

Sonogenetics is a non-invasive approach to activating neurons in C. elegans (Ibsen et al., 2015, Nature Communications)
The first study to define “Sonogenetics,” demonstrating that TRP-4 can sensitize specific neurons to low-pressure ultrasound to enable behavioral control in freely moving animals.

Sonogenetic control of mammalian cells using exogenous TRPA1 channels (Duque et al., 2022, Nature Communications)
Demonstrates that human TRPA1 (hsTRPA1) can be used as a sonogenetic actuator to achieve ultrasound-dependent calcium influx and neural activation in mammalian systems, both in vitro and in vivo.

Ultrasound Mediated Cellular Deflection Results in Cellular Depolarization (Vasan et al., 2022, Advanced Science)
Uses high-speed digital holographic microscopy to quantify ultrasound-induced membrane deflection, providing evidence for the mechanical forces required to gate sonogenetic channels.

Two parallel pathways are required for ultrasound-evoked behavioral changes (Magaram et al., 2022, PLOS ONE)
Investigates the interaction between sonogenetic tools and natural mechanosensory pathways, showing how multiple channels contribute to ultrasound-evoked behavior in C. elegans.

Useful Links:

IT’IS Attenuation Database
Calculate exact pressure loss and acoustic absorption through specific biological tissues

k-Wave Simulation Toolbox
MATLAB toolbox for modeling ultrasound propagation, use this to predict standing waves and pressure distribution in complex media

Evident Material Sound Velocities
General guide of ultrasonic velocities for non-biological materials

FDA Ultrasound Industry Guide
Regulatory framework for translational ultrasound. Useful to determine experimental intensities remain within safe Mechanical Index and Thermal Index limits.